Ders Öğretim Planı

Ders Kodu Ders Adı Ders Türü Yıl Dönem AKTS
ENNT632 Bioinformatics 927003 1 1 7.5

Dersin Amacı

It is aimed at providing basic and advanced knowledge of acquiring the data archives of genomes and proteins as well as the tools that have been developed to work with these archives.

Dersin Veren Öğretim Görevlisi/Görevlileri

Assist. Prof. Dr. Hilal AY

Ön Koşul Dersleri

None

Önerilen Diğer Hususlar

The up-to-date literature will be followed. In addition, the students will be provided with the opportunity to apply theoretical information to real-life problems.

Ders Kitabı / Malzemesi / Önerilen Kaynaklar

- Applied Bioinformatics: An Introduction. Paul M. Selzer, Richard J. Marhöfer, Oliver Koch. Springer, 2018. - Introduction to Bioinformatics. Arthur Lesk. Oxford, 2014. - Bioinformatics Research and Applications. Zhipeng Cai, Ovidiu Daescu, Min Li, Springer, 2017.

Staj Durumu

None

Dersin İçeriği

The biological foundations of bioinformatics; biological databases; sequence comparisons and sequence-based database searches; the decoding of eukaryotic genomes; protein structures and structure-based rational drug design; the functional analysis of genomes; comparative genome analyses.

Değerlendirme

# Etkinlikler Adet Yuzde Katkısı Yarıyıl İci Etkinlik Yıl Sonu Etkinlik
90 Yarıyıl (Yıl) İçi Etkinlikleri 1 40
91 Yarıyıl (Yıl) Sonu Etkinlikleri 1 60
1 Ara Sınav 1 50 1
6 Uygulama/Pratik 5 20 1
20 Rapor Hazırlama 3 30 1
2 Final Sınavı 1 50 1
38 Rapor Hazırlama 1 50 1

Ders İş Yükü Verisi

# Etkinlikler Adet Süresi(saat) Toplam İş Yükü(saat)
1 Ara Sınav 1 3 3
5 Derse Katılım 13 3 39
8 Rehberli Problem Çözümü 10 1 10
9 Problem Çözümü 10 1 10
10 Tartışma 5 1 5
11 Soru-Yanıt 10 1 10
20 Rapor Hazırlama 5 2 10
21 Rapor Sunma 5 2 10
29 Bireysel Çalışma 10 5 50
36 Rapor 5 2 10
54 Ev Ödevi 10 3 30

Haftalık Ders İçeriği

Hafta Teorik Uygulama Laboratuar Ders Notları
1 The Biological Foundations of Bioinformatics -- - Bioinformatics-1.pptx
2 Scientific Publications and Archives: Media, Content, and Access - -
3 Biological Databases - -
4 Sequence Comparisons and Sequence-Based Database Searches - -
5 Alignments and Phylogenetic Trees - -
6 The Decoding of Eukaryotic Genomes - -
7 Protein Structures and Structure-Based Rational Drug Design - -
8 The Functional Analysis of Genomes - -
9 Midterm Exam - -
10 Comparative Genome Analyses - -
11 Introduction to Systems Biology - -
12 Metabolic Pathways - -
13 Gene Expression and Regulation - -
14 Final Exam - -

Dersin Öğrenme Çıktıları

# Öğrenme Çıktı Id Açıklama
1 1539205 To review and assemble the general principles of molecular biology necessary for dealing with data on sequences, structures, interactions, metabolism, and regulation
2 1539206 Knowing the basic sizes, contents, and organizing principles of simple and complex genomes
3 1539207 Understanding the basic concepts of information retrieval, including how to frame queries
4 1539208 Being able to define and distinguish the concepts of homology, similarity, clustering, and phylogeny
5 1539209 Knowing the basic requirements of a successful drug and understanding some approaches to drug discovery and design
6 1539210 Becoming familiar with the data derivable from microarrays and their application to inferring and interpreting similarities and differences in gene expression patterns

Bölüm Program Çıktıları

# Program Çıktı Id Açıklama
1 78070 To be able to develop the knowledge on mathematics, science, nanoscience and nanotechnology at the level of expertise and to comprehend the interdisciplinary interaction on these subjects.
2 78490 To be able to create new information by synthesizing the information from different disciplines within the scope of nanoscience and nanotechnology.
3 78491 Ability to work in individually, Ability to work about disciplinary subjects and interdisciplinary level of expertise.

Ögrenme Çıktı Matrisi

Program Çıktısı
1 2 3
Öğrenme Çıktısı
1 5 5 5
2 5 5 5
3 5 5 5
4 5 5 5
5 5 5 5
6 5 5 5
* Katkı Düzeyi : 1 Çok düşük 2 Düşük 3 Orta 4 Yüksek 5 Çok yüksek